SE0450178

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_2548
  • Brassica rapa
  • SE0450178
  • PIF/harbinger
  • To2
  • A07:10139179-10139438
  • TAA
  • AGAGCATCTCCAATCTCACTCTATTTTTCACTCTAAAATAGAGT

Secondary structure and sequence

TSD    TIR
5'



3' 
TA   G          --  C           C               TTAGAGTAAAAAA       ATGGTACTCTATTTCTCACTCTATAATAGAGTGAAAAATAGGTTTACTCCAAATATAGAATAATTTGTT
  AGA CATCTCCAAT  CT ACTCTATTTTT ACTCTAAAATAGAGT             TGCTCCA                                                                     
  ||| ||||||||||  || ||||||||||| |||||||||||||||             |||||||                                                                     T
  TCT GTAGAGGTTA  GA TGAGATAAAAA TGAGATTTTATCTCA             TTGAGAT                                                                     
AA   G          CC  A           A               -------------       ATTATCTCAAACTTAAACGAGGTTACCATGAGATAAAATCTCATCTTTTATCTCACTACTTGTTTTTTT
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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