Plant MITE

SE0450179

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_2549
Brassica rapa
SE0450179
PIF/harbinger
To7
A03:23363227-23363421
TAA
AGAAC

Secondary structure and sequence

TSD TIR

5'

3'

TA   A TCCTC       -ATGA      GG    -----   ---   AGCTTCGACTAAGAATATTTTCTTAGCTTTTAACTAAGAAAAGCTATAAGAAG
  AGA C     ATTAATC     TCTTAG  TGAG     ATT   CTT                                                     
  ||| |     |||||||     ||||||  ||||     |||   |||                                                      
  TCT G     TAATTGG     AGAATT  ACTC     ATT   TAC                                                     
AA   C --TAC       GCCAA      AA    CAAAA   GAG   TAAACTGTGAAAAGTCGATTCTCTGCCAAGAATATAGAGAATAAATTCTCTAC

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE0450179

TAAGAACTCCTCATTAATCATGATCTTAGGGTGAGATTCTTAGCTTCGACTAAGAATATTTTCTTAGCTTTTAACTAAGAAAAGCTATAAGAAGCATCTCTTAAATAAGAGATATAAGAACCGTCTCTTAGCTGAAAAGTGTCAAATCATGAGTTAAAAACCTCAAATTAAGAAACCGGGTTAATCATGCTCTAA

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