SE0410180

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_2550
  • Brassica rapa
  • SE0410180
  • Tc1/Mariner
  • St4
  • A03:6735106-6735361
  • N.A.
  • GTTCTTTTTT

Secondary structure and sequence

TSD    TIR
5'



3' 
TACTCCCTCC          -ATA   TGTTCTATAACTTTGCATGTAGTTTAAGACAGCTGATGCAATTTCTGTTTTAACATTTTCATTTACTTGCTATCATTTATTCAGTCAAAATATGCTAGCAAACACA
          GTTCTTTTTT    TGA                                                                                                          
          ||||||||||    |||                                                                                                           
          CAAGAAGAAG    GCA                                                                                                          
         A          CAAG   TTATTAACTGCAAAATCATGAAAACAAAACACAATTATATAAACTGCAAATGTCTTAAGTTACGTATATCACTGTCTTCTAATAAAAAAATGGGAACATCGTAATT
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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