SE0430181

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_2551
  • Brassica rapa
  • SE0430181
  • hAT
  • Hat55
  • A06:7482915-7483342
  • GTATTAAC
  • CCAGGTTCTAAAAATCGGTCTAGACGG

Secondary structure and sequence

TSD    TIR
5'



3' 
GTATTAAC    -   C         GT    A   CAAC    TTCTATCCGAAATAATTTTCTTAAAATCTGATTTATAATGATTTATATGATTCAAATTGGTTTAAACAGTTCTAAATCAATTAAAATTGGTTAAAATCGATCTAAAATTATTTATATATGTTAAATAAGCAATAATATTATTACAAACCTACAAATTTGTCTATTTTCTTCT
        CCAG GTT TAAAAATCG  CTAG CGG    TCGG                                                                                                                                                                            
        |||| ||| |||||||||  |||| |||    ||||                                                                                                                                                                            G
        GGTT CAA ATTTTTAGC  GATC GCC    GATC                                                                                                                                                                            
 CAATTAT    A   A         --    C   -ATC    CGCGAAATATCCCTGATCGCTGATCCGCTTAATAAGCCCTAGATCCGCTCCGGATCTACAATCGTTTAATAACTAAATAAAATATATAAAATATGTAAATATTCTGTATAAAAACAAAAATTTAAATTAATATTTTAATAACATTACTTAATAGTTTCAATTTATATGTTTT
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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