SE0430186

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_2556
  • Brassica rapa
  • SE0430186
  • hAT
  • Hat56
  • A02:25398440-25398756
  • ATTGTAAT
  • ATTGTAATCAAGGGC

Secondary structure and sequence

TSD    TIR
5'



3' 
          A    ---   GGACCACAAGCCAAAAAAAAAGGAACTCATATAGAAACATAAAAAATTTGAAAATGAGAAGAAATTCAAATTATGGTGATCAAAACTAATATCTCTTTTTTTTATTTTTTATTAGCCTCATTGAAATGATGATATTTTT
ATTGTAATCA GGGC   GGC                                                                                                                                           
|||||||||| ||||   |||                                                                                                                                           G
TAATGTTAGT CCCG   GGA                                                                                                                                           
          -    GAG   CTTGTGCTGCTCAACTCGAATCCAGAACCTAGGGGTTTAGAAAACCCGGGGGTAAAAAAAAATTTTTATAATTAAAATATAAAAATTTCTAAATGCTATGTTTTTTTCCAATAACTTATTTCAATCTTTGAACAGTATT
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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