SE0430189

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_2559
  • Brassica rapa
  • SE0430189
  • hAT
  • Hat58
  • A01:5846076-5846349
  • ATTATATG
  • TATATGCAGTGGCGGAACCA

Secondary structure and sequence

TSD    TIR
5'



3' 
AT    TG   T      AC  --------AA   -     ATACCGGAGTCATAATTTTTTTTTTCAAAAACATAATTTATAAACCATTAAAAACTACAAATTATAACTTTAATTTTTAATGTATTGTAATTATTTTAGT
  TATA  CAG GGCGGA  CA          ATT TTTTT                                                                                                    
  ||||  ||| ||||||  ||          ||| |||||                                                                                                    A
  ATAT  GTC CCGCCT  GT          TCA CCCAG                                                                                                    
GT    TA   C      CC  CACTTCTTCT   C     TCGACTGGGATGATAAAAAAATTTATATAAATACAAACAAATTCTTTTTTTAATAACTGGGGTAATTTTATATTTTAAACTGGGGTGTTTTCTATATTAT
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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