SE0430191

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_2561
  • Brassica rapa
  • SE0430191
  • hAT
  • Hat5
  • A02:22692209-22692856
  • TGGATGTC
  • GGATGTCTAGGACTGGGCA

Secondary structure and sequence

TSD    TIR
5'



3' 
T        --   AC      AATAAACCGAATC  AAAACCCGAACCGAATCTGATCCGATAAAAATGAATCCGAACCGATCCGAACCCGACATAAATACCGAATGGATCTTGTTTTGTGGTATTTTGGGTTATGGGTATTATCCGAACCGAACCCGAATCTAAATGGATATCCGATAGAACCCGAAACATTCAAAACCTCGAAAAGATCTTGTACCAAACATGATCTCAATTCCTAATATACACTCAAAATACACTAAGAAATATTAAACATCTAAAATACTTATCTATTACATGAAGGTTGATGGTTAAAGATGGCCGTTGAAT
 GGATGTCT  AGG  TGGGCA             CG                                                                                                                                                                                                                                                                                                   
 ||||||||  |||  ||||||             ||                                                                                                                                                                                                                                                                                                    
 TCTGTAGG  TCC  ACCCGT             GG                                                                                                                                                                                                                                                                                                   
         TA   AT      -----AAGCCCCA  GTTAGCCCAAAGCCAAAATAGGTTAGCCCAAAGCCAAAAAGCCCAAATAATTTTAGTCGAGGTAAGCCTAATATACTTTTAAGCCAAGCCTTGGCCAAGCCCAAGATAGCCCAAGCCCAGCCCCAATCATTTAGAAGTCTCTTGGCCATGTTGGGTTATATAAAAGCCCAAGCCCAGGGTTAGCCAAGAAGCCAAATTGTTATGTACTAAACATGGATAAAACATTGATTTTGTATTTACTTTAGCCAAGAAGCCTATTGCTTTTGTTTTAAATTTAGATTTATGAAGTTC
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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