Plant MITE

SE0430195

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_2565
Brassica rapa
SE0430195
hAT
Hat60
A03:7292842-7293482
GTTCTTGT
TCAGTGCCGTGCGAAGG

Secondary structure and sequence

TSD TIR

5'

3'

GTTCTTG    T       GA   T      AGGCCCGAGGCGAGTTCAAAAATATATTTTACATGATATATTTTTAATAACATATATATATATATATATAACACTCAAAAGTTTTGAAGTATTACATAAACGTTTTCTAAATTTTCTTCACCAAAATTTTATAAAATAAAATTTTAAATCATGAACAAAAAGTATGAATTTGTAATATAAATACAAAGATATAAATTTTTGATTGAAATGTTGGTAGCTGTCAAAAATATAAATCTTAGCATTTAAATTAACTATAATAAACTATATATTGAAAATATTATATTTTCTTT
       TCAG GCCGTGC  AGG TTTCGG                                                                                                                                                                                                                                                                                                  
       |||| |||||||  ||| ||||||                                                                                                                                                                                                                                                                                                  A
       GGTC CGGCACG  TCT CGGAAA                                                                                                                                                                                                                                                                                                  
 GTTCTT    T       AA   -      ATTTTTTCCGTAAGCGGATCCCGGGGGTTTAAAACATCTTTAAAATCCCGAGTTTAATAATTTTTTTATGAAAATGTACCATCAATTGTATAAGATAATCAATCTAAAAATAAAAATAAACTTAAATTTAACCTGAAGACAAATTTCATTGATCCAAACATTAGTAAAAACGATATAAAATTTATTTTGATATTTCTAAGATGAAGATTTTTTGACATTTATAAACTAGTGTAACGAGAAAAAAATATACGATACTCAATCTAAATAAAATATATAAATACTCTTAAACT

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE0430195

GTTCTTGTCAGTGCCGTGCGAAGGTTTTCGGAGGCCCGAGGCGAGTTCAAAAATATATTTTACATGATATATTTTTAATAACATATATATATATATATATAACACTCAAAAGTTTTGAAGTATTACATAAACGTTTTCTAAATTTTCTTCACCAAAATTTTATAAAATAAAATTTTAAATCATGAACAAAAAGTATGAATTTGTAATATAAATACAAAGATATAAATTTTTGATTGAAATGTTGGTAGCTGTCAAAAATATAAATCTTAGCATTTAAATTAACTATAATAAACTATATATTGAAAATATTATATTTTCTTTATCAAATTCTCATAAATATATAAAATAAATCTAACTCATAGCATATAAAAAAAGAGCAATGTGATCAAATATTTACAGTTTTTTAGAAGTAGAATCTTTATAGTTTTATTTAAAATATAGCAAAAATGATTACAAACCTAGTTACTTTAAACAGAAGTCCAATTTAAATTCAAATAAAAATAAAAATCTAACTAATAGAATATGTTAACTACCATGTAAAAGTATTTTTTTAATAATTTGAGCCCTAAAATTTCTACAAAATTTGGGGGCCCTAGGCGAATGCCTTTTTTAAAAGGCTCTAAGCACGGCTCTGGTTCTTG

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