Plant MITE

SE0450197

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_2567
Brassica rapa
SE0450197
PIF/harbinger
To3
A02:22930948-22931113
TTA
AGGCTCCGAATGGTAACAGCGGATTG

Secondary structure and sequence

TSD TIR

5'

3'

TT     C            -G  GA   AGC     G GACAAGCGGTATCACTGCGGTGCGGTTTTGACAGTTATAAAAACGT
  AGGCT CGAATGGTAACA  CG  TTG   GGTGC G                                              
  ||||| ||||||||||||  ||  |||   ||||| |                                               
  TCCGA GCTTACCATTGT  GC  GGC   TGGCG T                                              
AT     A            AG  AG   --G     - GGCGTGAATTGTCATTGTTTTTAGAGATGTATATGATATATAGATA

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE0450197

TTAGGCTCCGAATGGTAACAGCGGATTGAGCGGTGCGGGACAAGCGGTATCACTGCGGTGCGGTTTTGACAGTTATAAAAACGTATAGATATATAGTATATGTAGAGATTTTTGTTACTGTTAAGTGCGGTGCGGTGCGGGACGGATGTTACCATTCGAAGCCTTA

Copy Cancel