SE0430198

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_2568
  • Brassica rapa
  • SE0430198
  • hAT
  • Hat61
  • A02:26856282-26856503
  • CAAGCCAG
  • GCCAGCAGAGCCGGTCTTGG

Secondary structure and sequence

TSD    TIR
5'



3' 
CAA  CA                --AAGG      AT   - - TTCTGCTTCCGGCCGCACAATATTATGATTTTAAACGGCCACATTTGGACAGAAAGTCCTTAGTATCTTA
   GC  GCAGAGCCGGTCTTGG      AAGCCA  GAA G C                                                                      
   ||  ||||||||||||||||      ||||||  ||| | |                                                                      G
   CG  CGTCTCGGCCAGAATC      CCACCG  ATC C G                                                                      
 AC  AA                ATTAAT      --   T C GTTTTATTTTTTACACCGGCTTCAGTGAGGTTGGGTGCTGGAACTTGTGATTGTTGTGGTTCGGTTCGGT
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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