SE0430199

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_2569
  • Brassica rapa
  • SE0430199
  • hAT
  • Hat62
  • A02:8415938-8416182
  • TTAATAAA
  • AACAGGGGCGAAGCCAGCCATA

Secondary structure and sequence

TSD    TIR
5'



3' 
TTAATA              -CA      TTTATTACTG      -- ATAA  TAAATAACTATATATAATGATATATATAAGTTAAAATAGGTGTATCGAACTCAGGTTCTTCAAAAGTTACGGGTGC
      AACAGGGGCGAAGC   GCCATA          GGTGCA  C    AT                                                                            
      ||||||||||||||   ||||||          ||||||  |    ||                                                                            A
      TTGTCCCCGCTTCG   TGGTAT          TCATCC  A    CG                                                                            
AAATAA              ATG      ---------C      TG ----  TGTACGTGGGTGACAATAAATCCAAAACTTATAAAATGTAATCTTTATATTCCCTTTTACCGAATTAACCAGTTCT
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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