SE0410200

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_2570
  • Brassica rapa
  • SE0410200
  • Tc1/Mariner
  • St11
  • A01:16912220-16912481
  • TA
  • TACTCCCTCCGTATCACTTTAAGTGGTGTTTA

Secondary structure and sequence

TSD    TIR
5'



3' 
         C          A      G    -----     AAAAAA  ---    TCAAAATAATAGATGTTCTCATTGTTCTAGATAGAATTTAATACCATTTAAACTTTGTGACCAATTGTAAAATACTGATTT
TACTCCCTC GTATCACTTT AGTGGT TTTA     GAGAA      AT   TGTT                                                                                 
||||||||| |||||||||| |||||| ||||     |||||      ||   ||||                                                                                  
ATGAGGGAG CATAGTGAAA TCACTA AAAT     AAACG      TT   TTAA                                                                                 
         A          A      A    TCCAA     ------  AAC    TTCTTTTATGTTTGAAGATATGTTAAATAGAACCAATGTATTTTTATAGTAATTTACTTTAATTAAGTTGGTTATTCTTTT
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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