Plant MITE

SE0430201

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_2571
Brassica rapa
SE0430201
hAT
Hat63
A07:7411902-7412166
TTAACAGA
GACAGAGCCAGTTCTAAGAAGCAGTGGGCCCGAAGC

Secondary structure and sequence

TSD TIR

5'

3'

TTAACA         A     A  A  C        CG    AAAAAAAAAAAAA    -T  GCATA --      TAAATAAAAAAGTAATTTTGAAAGTAGTAGGGGAATGCTTTCGAACCCATCACCTCTAAAAGTCTA
      GACAGAGCC GTTCT AG AG AGTGGGCC  AAGC             ACAA  TG     T  TAGTTA                                                                  
      ||||||||| ||||| || || ||||||||  ||||             ||||  ||     |  ||||||                                                                   
      TTGTCTCGG TGAGA TC TC TCGCCCGG  TTCG             TACG  GG     C  TATTTA                                                                  
AGACAA         C     C  A  T        --    -----------GG    AA  ----- CC      TTATTTTGGATATAGCCGGCGTGAGAATGTTTACAAAAAAATCGATTCAACCAATAACGTATCGAA

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE0430201

TTAACAGACAGAGCCAGTTCTAAGAAGCAGTGGGCCCGAAGCAAAAAAAAAAAAAACAATTGGCATATTAGTTATAAATAAAAAAGTAATTTTGAAAGTAGTAGGGGAATGCTTTCGAACCCATCACCTCTAAAAGTCTAAAGCTATGCAATAACCAACTTAGCTAAAAAAACATTTGTAAGAGTGCGGCCGATATAGGTTTTATTATTTATCCCGGAAGCATGGGCTTGGCCCGCTTCTACTCAGAGTCGGCTCTGTTAACAGA

Copy Cancel