SE0450202

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_2572
  • Brassica rapa
  • SE0450202
  • PIF/harbinger
  • To6
  • A09:25839755-25840088
  • TAA
  • AGACCATCTCCAA

Secondary structure and sequence

TSD    TIR
5'



3' 
TA   C         -C  A  CTTATTTCTATCTCTATATTTTCCCCTAAAATAGAGAAACTCTATTATAGAGATGAAAATGCTCCAATGTATGCCTCTATAATAGAGTTTCTCTATTTATAGGGGAAAATATAGAGATATGTTATTTTCACCTCTAAATATAGAGG
  AGA CATCTCCAA  CC TC                                                                                                                                                  
  ||| |||||||||  || ||                                                                                                                                                   
  TCT GTAGAGGTT  AT GT                                                                                                                                                  
AA   C         AC  -  GGAGATATTAAAGGAGGAATAAAGATAGAGATATAAAAGGGGATTTTATCTCTTTGAGATAATATCTCTACTTTTACGAGGTTACATACGGAGATATTATCTCAAGGAGATAAAATCTCCTTTTATATCTCCTTTCAATGAAAAAC
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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