Plant MITE

SE0450203

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_2573
Brassica rapa
SE0450203
PIF/harbinger
To36
A03:30787633-30787931
TAA
AGAGCATCTCCAACCCATTTCTATAATAGAGATCTCTAAAATAGAAAAAAAAAATAGAAATGGTGTTTTTGCTCCAATGTGTTCTTCTATAATAGAGGAATGCTATATTTGCCTCCATAAATAGAAGAATGCTATTTTTTCTCCTA

Secondary structure and sequence

TSD TIR

5'

3'

TA   G                             C           AA           A                                                                  A    G T         C   AA
  AGA CATCTCCAACCCATTTCTATAATAGAGAT TCTAAAATAGA  AAAAAAATAGA ATGGTGTTTTTGCTCCAATGTGTTCTTCTATAATAGAGGAATGCTATATTTGCCTCCATAAATAGA GAAT C ATTTTTTCT CTA  
  ||| ||||||||||||||||||||||||||||| |||||||||||  ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| | ||||||||| |||   
  TCT GTAGAGGTTGGGTGGAGATATTATCTCTA AGATTTTATCT  TTTTTTTATTT TACCACAAAAACGAGGTTACACAAGAAGATATTATCTCCTTACGATATAAACGGAGGTATTTATCT CTTA G TAAAAAAGG GAT  
AA   G                             A           -C           C                                                                  C    G T         A   AT

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE0450203

TAAGAGCATCTCCAACCCATTTCTATAATAGAGATCTCTAAAATAGAAAAAAAAAATAGAAATGGTGTTTTTGCTCCAATGTGTTCTTCTATAATAGAGGAATGCTATATTTGCCTCCATAAATAGAAGAATGCTATTTTTTCTCCTAAATATAGAGGAAAAAATTGGATTCCTCTATTTATGGAGGCAAATATAGCATTCCTCTATTATAGAAGAACACATTGGAGCAAAAACACCATCTTTATTTTTTTCTCTATTTTAGAAATCTCTATTATAGAGGTGGGTTGGAGATGGTCTAA

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