SE0450204

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_2574
  • Brassica rapa
  • SE0450204
  • PIF/harbinger
  • To36
  • Scaffold000240:6828-7126
  • TTA
  • AGAGCATCTCCAACTCATCTCTATAATAGAGATCTTTAAAATAGAGAAAAAA

Secondary structure and sequence

TSD    TIR
5'



3' 
TT   G                                                --TAAAAA    A               C               T                                             CCTTAA
  AGA CATCTCCAACTCATCTCTATAATAGAGATCTTTAAAATAGAGAAAAAA        TAGT TTTTTGTTCCAATGT TTTCTTTATAATAGA GAATGTTATATTTGCCTCTATAAATAGAGGAATGCTATTTTTTTT      
  ||| ||||||||||||||||||||||||||||||||||||||||||||||||        |||| ||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||      A
  TTT GTAGAGGTTGGGTAGAGATATTATCTCTAGAGATTTTATCTCTTTTTT        ATTA AAAAACGAGGTTACA AAGGAGATATTATCT CTTACGATATAAACGGAGATATTTATCTCCTTACGATAAAAAAGA      
AT   G                                                TTATCTTG    C               C               T                                             AAATAT
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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