SE0420205

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_2575
  • Brassica rapa
  • SE0420205
  • Mutator
  • M4
  • A05:7794617-7795026
  • TTAATTAAA
  • TTAATTAAAGGGAAATTGC

Secondary structure and sequence

TSD    TIR
5'



3'
         A          CACAAA      A     AG             G     A TA      ------   -     CA  -      G      -- A  - ACAATTATACCCTTAGGGTTAATTAATCTAGACTTAGGGTTTAGAGTTGAGGGGTGGGGTAAGGTTTTTGGAATGTGAAATTTATAATTCTAATAAATATATAAA
 TTAATTAA GGGAAATTGC      TACCAC TTCAT  TACCACTTTTCAT TTTAC C  ACCACT      TTT ACCCT  CT TTTAAT AAGGGT  A AA T                                                                                                         
 |||||||| ||||||||||      |||||| |||||  ||||||||||||| ||||| |  ||||||      ||| |||||  || |||||| ||||||  | || |                                                                                                          
 AATTAATT CCCTTTAATG      ATGGTG AAGTA  ATGGTGAAAAGTA AAATG G  TGGTGA      TGT AAAGT  TT TATGTA AAAAGT  T TC C                                                                                                         
A        C          -TCCAA      A     CA             A     - --      TTACTC   A     --  T      -      AA -  A TGTTTTCTGAGAATACGGAATAATAAATATATATGTTTAAAGAAAAACTTTTTGCTTTTAATACAAACTTTGATAAAAAAAATTAAAAAAATATAAAAAATTCAT

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End