SE0450206

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_2576
  • Brassica rapa
  • SE0450206
  • PIF/harbinger
  • To37
  • A10:14466198-14466387
  • TTA
  • AGGGCAACATTATCAATAGGTCCC

Secondary structure and sequence

TSD    TIR
5'



3' 
TT   G           ATA      ---CAAAT    GTCCCCAAATGAATAGTACAAGGACTCACAAGGACTCACCTCATTTGTCCCTTATTTA
  AGG CAACATTATCA   GGTCCC        GAAA                                                          
  ||| |||||||||||   ||||||        ||||                                                          G
  TCC GTTGTAATAGT   TCAGGG        GGGA                                                          
AT   G           CAA      AATTCCCA    TTCTTCCCCCTCCCCGGTGTTTTGTAGTCCTGGCTCCTTTTTTTTTCTCCTTTTCGGG
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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