SE0430208

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_2578
  • Brassica rapa
  • SE0430208
  • hAT
  • Hat64
  • A01:1126131-1126366
  • AAGGGGGA
  • CAGGGGCGAAGCCA

Secondary structure and sequence

TSD    TIR
5'



3' 
 AAGGGGGA              -----------------C    A ---  G -GT  TGGCACGTGCACCCCCTTATTTATTGATATTTGAAATGTTACACCTAAAGTTATTATAGTTTCAGTGGATC
         CAGGGGCGAAGCCA                  GTTT G   AG T   GG                                                                       
         ||||||||||||||                  |||| |   || |   ||                                                                        
         GTCCCCGCTTCGGT                  ACGT A   AT C   AT                                                                       
CAGGGGGAA              CTTCTTAATAAATTACCC    - ATA  - ACT  TTTTTATTTAGATGTACGTTACCCAAAACTTGAGTCCTGTGATACCCACGTTTGGGGCAAAAAATGGTTAA
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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