SE0430210

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_2580
  • Brassica rapa
  • SE0430210
  • hAT
  • Hat65
  • A06:10018564-10018900
  • GTCCCAGA
  • GACAGGGCCGGCTCAACA

Secondary structure and sequence

TSD    TIR
5'



3' 
GTCCCA   -          CA   CTGTT    -   CTAGGGCAAAAAAAAAAAATTTTACTCTCTTAAATTTATATAGAGATAATGTTTAAAATATTTTTAAAATTTAATCAATAATATTTTGTATATTTTGTAATGAAAATAAAACTATATACATATCAAATAATTTTG
      GAC AGGGCCGGCT  ACA     AGGG GCC                                                                                                                                       
      ||| ||||||||||  |||     |||| |||                                                                                                                                        
      CTG TCCCGGCCGA  TGT     TCCC CCT                                                                                                                                       
 AGACC   G          -A   -----    C   GTTCGCCACGCTGGCGGGGCCCAGGCTCAGGCACAGGAAGACACATTACTATTTATTCCCCGGGTTAAAAAATATTTAGATATAAAAATATATATTTTTTTTAATATTTATGTTATTTATTTTAACTTTTCCCGG
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

Copyright ©.   Contact us: contact@pmite.com   京ICP备2022028499号-3