SE0450211

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_2581
  • Brassica rapa
  • SE0450211
  • PIF/harbinger
  • To4
  • A01:96904-97094
  • TTA
  • AGAGCATCATTATTGGTGTCCCTTAGGTTGAGGCCCTTAGCGTAGGGTCCCTTAACTTTTAACTAAAAAAGCTAAGGAATGGCCCTTAA

Secondary structure and sequence

TSD    TIR
5'



3' 
TT  A                                              C     C             A       A  GG C     ATAA
  AG GCATCATTATTGGTGTCCCTTAGGTTGAGGCCCTTAGCGTAGGGTC CTTAA TTTTAACTAAAAA GCTAAGG AT  C CTTAA    
  || |||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||| ||||||| ||  | |||||    G
  TC CGTAGTAATAACCACAGGGAATCCAACTCCGGGAATCGCATCCCAG GAATT AAAATTGATTTTT CGATTCC TG  G GAGTT    
AT  C                                              A     A             G       C  AA A     CAAG
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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