SE0430212

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_2582
  • Brassica rapa
  • SE0430212
  • hAT
  • Hat22
  • A04:4444898-4445165
  • GTGATAGG
  • CAGGGCCGTC

Secondary structure and sequence

TSD    TIR
5'



3' 
GTGATAGG          -----  -   TTAATTTGAGGCCCTGTTCAAATAAAATATTAATAGTACATTTTATCAAGTAATTTTAAAATTTAATAATTTTGTCTTATTTTTTAATTATAAGTTCTAAATTTAGCA
        CAGGGCCGTC     TC AAA                                                                                                            
        ||||||||||     || |||                                                                                                             
        GTCCCGGCAG     CG GCG                                                                                                            
GGATAGTG          ATTGT  T   CGTTCACCTCGCCAGCTTGTCCCGGGGCTTTATATTTTTATTTTTAAATTCCGAAAAACCTTTATATATCTATTTAATACCATTCTTTGAAATTTTGAAATCTATATT
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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