SE0450214

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_2584
  • Brassica rapa
  • SE0450214
  • PIF/harbinger
  • To3
  • A06:7215139-7215304
  • TTA
  • AGGCTTCGAATG

Secondary structure and sequence

TSD    TIR
5'



3' 
TT            TTT  -  CCGTTCCGCTCCGCATCGCAGTTAACAATAACAAAAATCTCTACATATACTATATATCTAT
  AGGCTTCGAATG   AC AA                                                             
  ||||||||||||   || ||                                                             A
  TCCGAGGCTTAC   TG CG                                                             
AT            CAC  A  TTAAATTCGCCACGCCCTGTTCGCCAAGTTGACGCTACGCGAAAATTGTCAATATTTTTAT
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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