Plant MITE

SE0450217

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_2587
Brassica rapa
SE0450217
PIF/harbinger
To7
A07:13389740-13389954
TTA
AGACCATGATTAACTCGAGTCTCTTAACTGGAATTCTTAGCTT

Secondary structure and sequence

TSD TIR

5'

3'

TT  AC         C  GAG         -   AA          CG   AAGAAACGGTTCTTACATTTTCTTAGATTTTAACTAAGAAAAACTAAGAACAGTCTCT
  AG  CATGATTAA TC   TCTCTTAAC TGG  TTCTTAGCTT  GCT                                                          
  ||  ||||||||| ||   ||||||||| |||  ||||||||||  |||                                                          T
  TC  GTACTAATT AG   AGAGAATTG ACC  AAGAATTGAG  TAC                                                          
AT  CC         A  GCA         G   -C          --   TAAACTGTGAAAAAAAAAATGTTAAAAGCGATTCTCTGCCGAGAATATAGAGAATAAA

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE0450217

TTAGACCATGATTAACTCGAGTCTCTTAACTGGAATTCTTAGCTTCGGCTAAGAAACGGTTCTTACATTTTCTTAGATTTTAACTAAGAAAAACTAAGAACAGTCTCTTAAATAAGAGATATAAGAGCCGTCTCTTAGCGAAAATTGTAAAAAAAAAAGTGTCAAATCATGAGTTAAGAACCCAGGTTAAGAGAACGGAATTAATCATGCCCTTA

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