SE0430225

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_2595
  • Brassica rapa
  • SE0430225
  • hAT
  • Hat67
  • A09:18899349-18899714
  • ATCCGACC
  • CGACCCAGGCCCGGGCTTGA

Secondary structure and sequence

TSD    TIR
5'



3'
ATC  ACC   GC    G         --AT   -  -    ACATTTGCATGGGGCCTACAAATTGTATAAGTTTTTTGGGTTTGCATTTTCTGTTTTTATTGTTAGCATATGAAAGGAAAATTAAGTTTTAGGACGTGTTTTGAACATATAACATGATAAATGTTTAATTTTTTTTTTCATTC
   CG   CAG  CCGG CTTGAGCAG    ACC TA AGAA                                                                                                                                               
   ||   |||  |||| |||||||||    ||| || ||||                                                                                                                                                
   GC   GTC  GGCC GAACTCTAT    CCC GG TATG                                                                                                                                               
CCA  CTA   AC    A         AAAG   A  T    CTTTGGTTTTTATATCCGGGATAGATTATTTAATTTTTAAAATTAATAATTTTAAGATTAAATGTAAATTCTTAATGTTATAGGAATTTTAAATATTTTCATAGTTAAGACTTTTAATAGAAAGATAAAGTAAAATATATTCT

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End