SE0450227

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_2597
  • Brassica rapa
  • SE0450227
  • PIF/harbinger
  • To24
  • A09:4774908-4775320
  • TTA
  • T

Secondary structure and sequence

TSD    TIR
5'



3' 
            GG     A  ---------    G - GTATTTTGATGGACTTAAAAATTCAAACTAAATCTAGTGTTATTGGTTCTATGATTTTAAAATATGTATTGAAATCATGTGTTATTCGTTTAGTGATTCATAAATTCTAATTCAAATCAAGTGTTATTCGTTTAATGATTCATCAATTCTAATTCAAATCAAGTGTTATTCAATCGTA
       TTAGT  GGGTT TT         AGTT G T                                                                                                                                                                                  
       |||||  ||||| ||         |||| | |                                                                                                                                                                                   
       CACAA  TAACC AA         AATA A T                                                                                                                                                                                  
ATTCCTC     --     -  ATACATAAA    - C AAATCTTTAAGTATATTATAAATATTTAGGTTCATTTTATATGTTTAAAAGTTTAAGAGCCTAATCATAAATGTTTAGGCTTTCAAAAGTAAGCCTAAACTCGGAAACATAAAAAGTGTTTCTTTAGGTACGTTTAGGTAAGTTTATGTAATACTTTAGTTTAGATAATCATTTAGGC
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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