SE0420230

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_2600
  • Brassica rapa
  • SE0420230
  • Mutator
  • M4
  • A10:8087737-8088100
  • CTCCAACAT
  • GGGAAATTAC

Secondary structure and sequence

TSD    TIR
5'



3'
 CTCCAACAT          CACAAA  G   ATTA  A    AAC       G     ACTAAC    --  TA           AACGAAGGGTAAAAGACAATTATACACTTAGGGTTAACTAATCTAGACTTAGGGTTTAGAGTTGAGGGGTAGAGTAAAGTTTTTGAAATGTGAAATTTAGGA
          GGGAAATTAC      TA CAT    AT GTAC   TTTTTAT TTTAC      TATT  TT  CCCTTACTTTT                                                                                                      
          ||||||||||      || |||    || ||||   ||||||| |||||      ||||  ||  |||||||||||                                                                                                       
          CCCTTTAATG      AT GTG    TA CATG   AAAAGTA AAATG      GTGA  AT  TTCTCTGTAAA                                                                                                      
TACAACCTCC          -TACAA  G   AAAG  C    GTA       A     ------    TA  --           AGTTTTTATGGAAGAAGTAATTCACTGTTTTCTGAGAATACAGGAACAATAAATATATTAAAAATATATAAAAAATTCATAAATAAATATATAAATAATCTT

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End