SE0450232

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_2602
  • Brassica rapa
  • SE0450232
  • PIF/harbinger
  • To5
  • A07:8996772-8996983
  • TAA
  • AGAGCATGATTAATGGGAGATTCTTAGAGTAGGGTTTTTAGCGGAATATAAGAAACTGTCTCTTAACTGTTAACTAAAAAAACTAAGATTCGGCTCCTAAAT

Secondary structure and sequence

TSD    TIR
5'



3' 
TA                G  A  C    A  A                     A               G            AC     T    C  C     AA
  AGAGCATGATTAATGG AG TT TTAG GT GGGTTTTTAGCGGAATATAAG AACTGTCTCTTAACT TTAACTAAAAAA  TAAGA TCGG TC TAAAT  
  |||||||||||||||| || || |||| || ||||||||||||||||||||| ||||||||||||||| ||||||||||||  ||||| |||| || |||||  A
  TCTCGTACTAATTATC TC AA AATC CA CTCAAGAATCGTCTTATATTC TTGGTAGAGAATTGA AATTGATTTTTT  ATTCT GGCC AG ATTTA  
AA                -  C  A    C  C                     A               A            CA     T    A  A     AA
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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