Plant MITE

SE0450234

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_2604
Brassica rapa
SE0450234
PIF/harbinger
To1
A09:26555215-26555410
TAA
TAAGGGCATCTCCAACCCCACTCCATATTTTACTCCAAAATTGAAAAAATGAAGTGAGAAATGGAGTAATGAACAAAAAATAAAAGGATTACTC

Secondary structure and sequence

TSD TIR

5'

3'

                                         T         A    A          A                  G    C  CATT
TAAGGGCATCTCCAACCCCACTCCATATTTTACTCCAAAAT GAAAAAATG AGTG GAAATGGAGT ATGAACAAAAAATAAAAG ATTA TC    
||||||||||||||||||||||||||||||||||||||||| ||||||||| |||| |||||||||| |||||||||||||||||| |||| ||     
ATTCCCGTAGAGGTTGGGGTGAGGTATAAAATGAGGTTTTA CTTTTTTAC TCAC CTTTACCTCA TACTTGTTTTTTATTTTC TAAT AG    
                                         C         C    C          C                  G    A  ATAT

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE0450234

TAAGGGCATCTCCAACCCCACTCCATATTTTACTCCAAAATTGAAAAAATGAAGTGAGAAATGGAGTAATGAACAAAAAATAAAAGGATTACTCCATTTATAGAATAATGCTTTTATTTTTTGTTCATCACTCCATTTCCCACTCCATTTTTTCCATTTTGGAGTAAAATATGGAGTGGGGTTGGAGATGCCCTTA

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