Plant MITE

SE0410235

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_2605
Brassica rapa
SE0410235
Tc1/Mariner
St15
A09:1198065-1198324
TA
TACTCCCTCTGTTCCTGAAACTAAGAT

Secondary structure and sequence

TSD TIR

5'

3'

    C               C      -TTTC   AATATGCACGCTTATTAAGAATTTAATAAATGTCTATAATTTAATTTATTTTTTATTTTATTATACAATTTCCAATAACTTTCCACCAATGAAAT
TACT CCTCTGTTCCTGAAA TAAGAT     TAA                                                                                               
|||| ||||||||||||||| ||||||     |||                                                                                               T
ATGA GGAGGCAAGGGCTTT ATTCTA     TCT                                                                                               
    T               C      TAAAA   AAAAAAAGAACAAGGTGTTTTTATCTAAAAGATATAACAATTCCATGAAAAAATATGAAAACTACTTGTAATTAACTCTTATAAACTTAACTAAT

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE0410235

TACTCCCTCTGTTCCTGAAACTAAGATTTTCTAAAATATGCACGCTTATTAAGAATTTAATAAATGTCTATAATTTAATTTATTTTTTATTTTATTATACAATTTCCAATAACTTTCCACCAATGAAATTTAATCAATTCAAATATTCTCAATTAATGTTCATCAAAAGTATAAAAAAGTACCTTAACAATATAGAAAATCTATTTTTGTGGAACAAGAAAAAAATCTAAAATATCTTACTTTCGGGAACGGAGGTAGTA

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