Plant MITE

SE0430240

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_2610
Brassica rapa
SE0430240
hAT
Hat15
A09:23477646-23477909
TATGGATT
CAGGGCCGGGCCTGAA

Secondary structure and sequence

TSD TIR

5'

3'

TATGGATT                AAATATT      -      AA   A  --    TGGCCCTTTTGTTTCTAAAAACAGTAAAAATATTAAAAGTTGTGGCTGAGAATACTTGAACTCGGGTCAATTCCCAC
        CAGGGCCGGGCCTGAA       GGCCCA CAAGCA  AAG TA  TTTT                                                                             
        ||||||||||||||||       |||||| ||||||  ||| ||  ||||                                                                             A
        GTCCCGGCCCGGACTT       TCGGGT GTTCGT  ACG AA  CCGG                                                                             
TTAGGTAT                ---ATCT      A      AC   -  CC    ACTGCTTTTATATATATAACATCCCCGGTTTATATTCGTATTTTTCGTACATCGAGATAACCATTGTAACAATATAA

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE0430240

TATGGATTCAGGGCCGGGCCTGAAAAATATTGGCCCACAAGCAAAAAGATATTTTTGGCCCTTTTGTTTCTAAAAACAGTAAAAATATTAAAAGTTGTGGCTGAGAATACTTGAACTCGGGTCAATTCCCACAAATATAACAATGTTACCAATAGAGCTACATGCTTTTTATGCTTATATTTGGCCCCTACAATATATATATTTTCGTCAGGCCCCAAGCACATGCTTGATGGGCTTCTATTCAGGCCCGGCCCTGTATGGATT

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