Plant MITE

SE0450243

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_2613
Brassica rapa
SE0450243
PIF/harbinger
To15
A01:13334299-13334589
ATT
GGAGGTGATTAGTTGGGCTGTA

Secondary structure and sequence

TSD TIR

5'

3'

 ATT  A       A           AC  T      T   TTTT --------------------     - AGTATATAAGATTTTTGATTTTTCTTTAAATGATGTAACTTTAAAATTTCCTACAGCTAAAAAGATGGAGATTTAAAAAATAAGATT
    GG GGTGATT GTTGGGCTGTA  TA AGAAAA TTA    A                    AAATT T                                                                                       
    || ||||||| |||||||||||  || |||||| |||    |                    ||||| |                                                                                        
    CC CCACTAA CAATCCGATAT  CT CATTGA AAT    T                    GTATT A                                                                                       
TTAT  -       C           -C  T      -   ---- CAAATTAAAAGTAGATGTAG     T TGATGATTAGTACTAAATAAAATCAAAAATTTCAATGTTGTTTTTTTTGATTTCAATGTCGTTTTTGTATGTTTTTTATCAATCTTT

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE0450243

ATTGGAGGTGATTAGTTGGGCTGTAACTATAGAAAATTTATTTTAAAATTTAGTATATAAGATTTTTGATTTTTCTTTAAATGATGTAACTTTAAAATTTCCTACAGCTAAAAAGATGGAGATTTAAAAAATAAGATTTTTCTAACTATTTTTTGTATGTTTTTGCTGTAACTTTAGTTTTTTTTGTTGTAACTTTAAAAACTAAAATAAATCATGATTAGTAGTATTTATGGATGTAGATGAAAATTAAACTTAAAGTTACTTCCTATAGCCTAACCAATCACCCCTATT

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