Plant MITE

SE0410247

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_2617
Brassica rapa
SE0410247
Tc1/Mariner
St5
A07:18799401-18799651
TA
TACTCCCTCCGTTCCTAAAAGTTGTATGTTCTG

Secondary structure and sequence

TSD TIR

5'

3'

         C   CC      T           GAAA      T  --    AAAAAGATACATTTTTTACTTTTTCAATGTATGATTTTATGAAAAATTGTAAGTTTCAAAAAAATTAATGGTGTTTA
TACTCCCTC GTT  TAAAAG TGTATGTTCTG    AAAAAT TG  TTTT                                                                             
||||||||| |||  |||||| |||||||||||    |||||| ||  ||||                                                                              
ATGAGGGAG CAA  ATTTTC ACGTATAAGAT    ATGAAA AG  TATA                                                                             
         A   AA      T           ----      -  TG    TAATTCTTTTGAGTAATTTATAAGTAACAAAAAACACTTATTGTTAAAAGGTATTGAAATTTGGTTATCTTTAAGTT

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE0410247

TACTCCCTCCGTTCCTAAAAGTTGTATGTTCTGGAAAAAAAATTTGTTTTAAAAAGATACATTTTTTACTTTTTCAATGTATGATTTTATGAAAAATTGTAAGTTTCAAAAAAATTAATGGTGTTTATTGAATTTCTATTGGTTTAAAGTTATGGAAAATTGTTATTCACAAAAAACAATGAATATTTAATGAGTTTTCTTAATATATGTGAAAAGTATAGAATATGCATCTTTTAAAAACAGAGGGAGTA

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