Plant MITE

SE0430248

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_2618
Brassica rapa
SE0430248
hAT
Hat59
A01:16853076-16853393
AATAGGGT
T

Secondary structure and sequence

TSD TIR

5'

3'

AA         T     ---    TAATTTGGGGTGGCCTAAAGCACAAAAAAATAAATTGTGTGGCCTAATATATAAATACCAACAATATATAGTAATACACTAACACCAAACCAGTAAAAAGTGTAAAATGTAATCAAATGGTTAAAATAAAAACTATA
  TAGGGTCAG GCCGT   CCCA                                                                                                                                         
  ||||||||| |||||   ||||                                                                                                                                         T
  GGGATAAGT CCGGG   GGAC                                                                                                                                         
 T         -     CAG    GGTATTCCGTTCATTTCGTAGACGAAATCCGGTGTTATTTATCTCCTTTTTAATTCCGGTGTATAGTGATTAATAATCTATCTAGTTTACCAATTGTTCAAACTTGAATATGGTATCAAGCTAGAAAGAAAACAGGT

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE0430248

AATAGGGTCAGTGCCGTCCCATAATTTGGGGTGGCCTAAAGCACAAAAAAATAAATTGTGTGGCCTAATATATAAATACCAACAATATATAGTAATACACTAACACCAAACCAGTAAAAAGTGTAAAATGTAATCAAATGGTTAAAATAAAAACTATATTGGACAAAAGAAAGATCGAACTATGGTATAAGTTCAAACTTGTTAACCATTTGATCTATCTAATAATTAGTGATATGTGGCCTTAATTTTTCCTCTATTTATTGTGGCCTAAAGCAGATGCTTTACTTGCCTTATGGCAGGGACGGGCCTGAATAGGGT

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