Plant MITE

SE0430250

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_2620
Brassica rapa
SE0430250
hAT
Hat73
A09:25738423-25738601
AATGGAAT
TCAGGGCCGTCCCTGAGATGCTGG

Secondary structure and sequence

TSD TIR

5'

3'

AATGGAA      - C    -------------            ---      AAA  AATTTAGTAAGGGTTTTATAAAAAAAATTTTTTTTACAAA
       TCAGGG C GTCC             CTGAGATGCTGG   GGGCCT   AC                                        
       |||||| | ||||             ||||||||||||   ||||||   ||                                        T
       AGTCCC G CAGG             GACTTTGTGGCC   TCCCGG   GG                                        
TAAGGTA      C C    ACCCGTGTCGCCT            GAA      ---  GTTTAAAAAAATTTTTTAAATGTATTCTTCCCCGGGGATT

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE0430250

AATGGAATCAGGGCCGTCCCTGAGATGCTGGGGGCCTAAAACAATTTAGTAAGGGTTTTATAAAAAAAATTTTTTTTACAAATTTAGGGGCCCCTTCTTATGTAAATTTTTTAAAAAAATTTGGGGGCCCTAAGCCGGTGTTTCAGTCCGCTGTGCCCAGGACCGCCCCTGAATGGAAT

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