SE0410252

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_2622
  • Brassica rapa
  • SE0410252
  • Tc1/Mariner
  • St12
  • A03:8141979-8142242
  • TA
  • TACTCCCTCTGTTTTGATATGTAAGTAGTT

Secondary structure and sequence

TSD    TIR
5'



3' 
               G  A           ----ATAACAA    --   TT   -- CACA   TAAGATGTTTACATAATCCAAAGCACATTTTACATTTATTACATGTTGTGTGACCAATCAAATAATTCATACTT
TACTCCCTCTGTTTT AT TGTAAGTAGTT           AAAA  TGT  GTT  T    ATG                                                                          
||||||||||||||| || |||||||||||           ||||  |||  |||  |    |||                                                                           
ATGAGGGAGACAAAA TA ACATTCATCAA           CATT  TCA  AAA  A    ATT                                                                          
               A  A           ACAAAAATAAA    CA   --   TC ----   TTCACACTTATAATTCTTTTTGAAAATGAAAACTTTTTTATCGTAAATTATGTATTTAAGTTGGTTATTATTTT
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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