SE0430254

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_2624
  • Brassica rapa
  • SE0430254
  • hAT
  • Hat11
  • A04:13446549-13446862
  • ACTGTATC
  • CAGGGGCGTCCCT

Secondary structure and sequence

TSD    TIR
5'



3' 
ACTGTATC             AG     TGG     ATAAA   AAAGTAAATTGGGGGCCTATCTAATTGTGGATTCATTTTATTTTTAATGTTTCCATATTAATATTATTTTGTTTTTTCACTGACATATTAGTAATGGACTGAATTTAATTCATTTTGA
        CAGGGGCGTCCCT  AGTTA   AGGCC     CAA                                                                                                                      
        |||||||||||||  |||||   |||||     |||                                                                                                                       
        GTCCCCGCAGGGA  ACCGT   GTCGG     TTG                                                                                                                      
CTATGTCA             --     ---     -----   ACTTCGTAACCGGATCCCGGGGGTAAAAAATTCTGGAGGTAAAAATTTTCAAAATAATATTAAAAATATTTATTAAAACCTAAAATGACAAAACATTTCATTTTTTTTATATGGTTAC
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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