SE0430259

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_2629
  • Brassica rapa
  • SE0430259
  • hAT
  • Hat68
  • A08:7402803-7403164
  • TATAAAGT
  • CAGAGGCGTGC

Secondary structure and sequence

TSD    TIR
5'



3' 
TATAAAGT   A G     CTAC   --GTATT AA       TTCGCTTCA     CCGATTAATAT       TTTA  -   TTA -    TAAAATAATTTCTAGTCTAGTGGTTTAAACTTATTTAAGAAAAAACATTTCTACGAAAATTAATTAACTCATTTTCTGAATTCATGTATTTTTTTCTA
        CAG G CGTGC    AGT       G  TAAGGCA         GGTTC           GACTATT    GG GCT   A AATT                                                                                                  
        ||| | |||||    |||       |  |||||||         |||||           |||||||    || |||   | ||||                                                                                                  T
        GTC C GCACG    TCA       C  ATTCCGT         TCAAG           ATTTGAA    TA ATG   G TACT                                                                                                  
TGAAATAT   A G     CTTC   AAATCCC GG       ---------     -----ATTTTT       ----  A   -TT G    TTTGTTAAAAGATTATACTATATAATAAAAGTGGTTTATGTGTTCAGATTATGACATTTTTTTATTCAAATATTGCATTTATACAATATAATACAATA
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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