Plant MITE

SE0410262

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_2632
Brassica rapa
SE0410262
Tc1/Mariner
St7
A06:22084088-22084338
TA
TACTCCCTCC

Secondary structure and sequence

TSD TIR

5'

3'

     C    GTTCCTTAATAA    CTTTCTAGAAAAAAATTTTGTTTCACAAAGATGTATTTTTTGTGTTTTCTATAAAAAATTTGTAAACTTCAAGAAAATTAATTGACTTTATTGAATTACTATTGG
TACTC CTCC            TAGA                                                                                                         
||||| ||||            ||||                                                                                                         T
ATGAG GAGG            CAAA                                                                                                         
     T    ------------    GATTTTCTATATAAAAAATCATAAAAGTGTGTATAATTCTTTTGTGTAATTTGATAGTATTCTTGACATAGCAAAAGACATTAAAAGTTAAAAGTTATTGAAAAT

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE0410262

TACTCCCTCCGTTCCTTAATAATAGACTTTCTAGAAAAAAATTTTGTTTCACAAAGATGTATTTTTTGTGTTTTCTATAAAAAATTTGTAAACTTCAAGAAAATTAATTGACTTTATTGAATTACTATTGGTTAAAAGTTATTGAAAATTGAAAATTACAGAAAACGATACAGTTCTTATGATAGTTTAATGTGTTTTCTTAATATGTGTGAAAATACTAAAAAATATATCTTTTAGAAACGGAGTGAGTA

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