Plant MITE

SE0450269

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_2639
Brassica rapa
SE0450269
PIF/harbinger
To44
A09:17994822-17995115
TTA
AGAGCACCCGCAATGG

Secondary structure and sequence

TSD TIR

5'

3'

TT                GAATC   A                    ----------AAATAATTAAATAATC     ACCCTACCAAAAGCTAAGGATTCAATCCTTAAAATTCCTAAATAAGGACTCTTTCTTAGTGAATCCTTGCACTA
  AGAGCACCCGCAATGG     CTT AGGGGGAGTCCTTAGGAAAA                          GGTAG                                                                          
  ||||||||||||||||     ||| ||||||||||||||||||||                          |||||                                                                           
  TCTCGTGGGCGTTACC     GAG TTCCCCTCAGGAATCTTTTT                          ATAAA                                                                          
AT                ACAAT   A                    CACATAAAACTAAAAAATTCATAATA     TAAAAAAAGAAAAAATCTATTTTTTTATTTATAGTTGGTTAGCGCCTAGCGGTGTACAGCAGCCCTGGGCATTT

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE0450269

TTAGAGCACCCGCAATGGGAATCCTTAAGGGGGAGTCCTTAGGAAAAAAATAATTAAATAATCGGTAGACCCTACCAAAAGCTAAGGATTCAATCCTTAAAATTCCTAAATAAGGACTCTTTCTTAGTGAATCCTTGCACTATTTACGGGTCCCGACGACATGTGGCGATCCGCGATTGGTTGATATTTATTTTTTTATCTAAAAAAGAAAAAAATAAATAATAATACTTAAAAAATCAAAATACACTTTTTCTAAGGACTCCCCTTAGAGTAACACCATTGCGGGTGCTCTTA

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