SE0450270

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_2640
  • Brassica rapa
  • SE0450270
  • PIF/harbinger
  • To45
  • Scaffold000104:522092-522367
  • TAA
  • AGAGCACCTCCAATGGCAGGTTCTACCCATTGGAGTTCTAAAGATTCATATGTGTATAAGTATATATTGTATATGTGTATATATGTGTGGGGTCCATTATTTTGTGGAGAACCCCTCCTTTAAGGTTCTAAAAGCTTTGTTTTAAGAACCTTAAGGGTGGGGTTCTCCATAAAATAATGAACCCCACACCTACATACACATATACAACATATACTTATACATATATGAATCTTTAGAACTCCAATGGGTAGAATCCCCATTGGAGGTGCTCT

Secondary structure and sequence

TSD    TIR
5'



3' 
TA                CA                                               A              A  T         C                     T             A     T
  AGAGCACCTCCAATGG  GGTTCTACCCATTGGAGTTCTAAAGATTCATATGTGTATAAGTATAT TTGTATATGTGTAT TA GTGTGGGGT CATTATTTTGTGGAGAACCCC CCTTTAAGGTTCT AAAGC 
  ||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| || ||||||||| ||||||||||||||||||||| ||||||||||||| ||||| T
  TCTCGTGGAGGTTACC  CTAAGATGGGTAACCTCAAGATTTCTAAGTATATACATATTCATATA AACATATACACATA AT CACACCCCA GTAATAAAATACCTCTTGGGG GGGAATTCCAAGA TTTTG 
AA                -C                                               C              C  C         A                     T             A     T
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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