Plant MITE

SE0430272

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_2642
Brassica rapa
SE0430272
hAT
Hat76
A07:4885287-4885558
CCTCAGTC
CTCAGTCCAGTGCCGGTCCTG

Secondary structure and sequence

TSD TIR

5'

3'

 C  C  TC   T          ---     A  -  GGCCACAAGCTAAATATTTTTTTGGGCATAATAAATTTATAAAATTAAAACAAAACAAAGAAAAAACGTAAATGTGGAGAGAAATATTCGAACCTGGTACCT
  CT AG  CAG GCCGGTCCTG   ACATT TA TG                                                                                                      
  || ||  ||| ||||||||||   ||||| || ||                                                                                                      C
  GA TC  GTC CGGCCGGGAT   CCTTC GT TG                                                                                                      
CT  C  -C   T          ACC     -  C  GTTCGTACACGAAGGCCGGAGTTATATTATTAATTGTAAAGCCGGTGTAACAACTTATATTAGGAAGTCGTCTAAACCAAGACGTAGGAATTCTTATCCCTT

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE0430272

CCTCAGTCCAGTGCCGGTCCTGACATTATATGGGCCACAAGCTAAATATTTTTTTGGGCATAATAAATTTATAAAATTAAAACAAAACAAAGAAAAAACGTAAATGTGGAGAGAAATATTCGAACCTGGTACCTCTTCCCTATTCTTAAGGATGCAGAACCAAATCTGCTGAAGGATTATATTCAACAATGTGGCCGAAATGTTAATTATTATATTGAGGCCGGAAGCACATGCTTGGTCTGCTTCCCCATAGGGCCGGCTCTGCCTCAGTC

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