SE0430274

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_2644
  • Brassica rapa
  • SE0430274
  • hAT
  • Hat77
  • A06:21554705-21555384
  • TATACAAT
  • CTATGTTACATGGAA

Secondary structure and sequence

TSD    TIR
5'



3' 
TATACAAT       A       ------A    AGCGGGTACGTAGAAGCGGAAGCGTAAGGAAGCGCAGAAGCGAGATTTTTAAAAATATTAGGAAGCGGGTACGTGTTGAGAGCGTATATCCATATATAAATATATATATATATATATATAAATTTTTAAAAAAATTAGGACTAAAATTACATGATTTAAATTTGAAATAAAACATTTATTCATTTATAATAATTTTGAAATGATTTTATATTAAAACTGTAAAAATATACATAAATTAAGTTTACAAAAAATATTATATTAATTATTTTTAATACTTCATAAATAATTGACACAATATGTTTCAATATG
        CTATGTT CATGGAA       CGGA                                                                                                                                                                                                                                                                                                                     
        ||||||| |||||||       ||||                                                                                                                                                                                                                                                                                                                      
        GATGCAA GTGCCTT       GCCT                                                                                                                                                                                                                                                                                                                     
TAACATAT       C       CGAAGTA    GCAGACGAAGGGCGAAGCCTTGGCCTTAGCCTTAGCCTTGGAACACCTTCGAACGCCTTAGAGCGAAGGTTTTGCAAAGATTTTATAAGAGAAATTTTTGGACAACCTTCGAATACTAAGGCAAAACCTTAGTGCGAAGGTAAAAATTTTTTTTATGTTACATATAGTTATTTTATATTTTGGTATCAAAATTAGATATATTTTATTTTTTTAATTATCATTACTTATAACTCAATATTTATATGTTTATAGTTTTTATTATGATATTTAATAGAAATACGTAACTCTAAAAAATAATTTCTATATCGT
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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