Plant MITE

SE0450284

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_2654
Brassica rapa
SE0450284
PIF/harbinger
To48
A06:6737839-6738131
ATA
GGGTGTAACTG

Secondary structure and sequence

TSD TIR

5'

3'

ATA  G        -------------  GA AAATAAAAGGAACATATGGAATGATAGGAATCACTATTTATGGAATTTTGTGGAATGGAATCAGTATTCCATTTGTTCATGAACATTTTTGATTTGGAATGATTTTTCAAATGATAGTTAAA
   GG TGTAACTG             GT  C                                                                                                                          
   || ||||||||             ||  |                                                                                                                           
   CC ACGTTGAC             AC  C                                                                                                                          
ATA  G        CTTACATACAAAA  -- TTATTTTTGAAGGCCTTACGAATTAAGGATACGTAAGGTTTTTAACAAGTGGTAAATGTTTTCTTTTTACCTTTCCCATAAGGTAAGTTAAGGTGTAGTAAGGTATAATAAGGTTTATTTTA

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE0450284

ATAGGGTGTAACTGGTGACAAATAAAAGGAACATATGGAATGATAGGAATCACTATTTATGGAATTTTGTGGAATGGAATCAGTATTCCATTTGTTCATGAACATTTTTGATTTGGAATGATTTTTCAAATGATAGTTAAAATTTTATTTGGAATAATATGGAATGATGTGGAATTGAATGGAATACCCTTTCCATTTTTCTTTTGTAAATGGTGAACAATTTTTGGAATGCATAGGAATTAAGCATTCCGGAAGTTTTTATTCCAAAAACATACATTCCAGTTGCAGCCATA

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