SE0450288

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_2658
  • Brassica rapa
  • SE0450288
  • PIF/harbinger
  • To22
  • A07:21552154-21552417
  • TTA
  • AGGGTATGAATGGTGACCAAGGAACGACGAGGAACAAATG

Secondary structure and sequence

TSD    TIR
5'



3'
TT     A   A         ----A       C       A    -----------C    -  --  A  TTCCTTAAAAAAAATCACCATTCAT   ----   TAATTTTTCCTTCTCATTCCTTACCATTTCTTTTTTTGTAGAGAATTAA
  AGGGT TGA TGGTGACCA     GGAACGA GAGGAAC AATG            ATTC TC  TA CA                         AAA    GAA                                                 
  ||||| ||| |||||||||     ||||||| ||||||| ||||            |||| ||  || ||                         |||    |||                                                 A
  TCCCA GCT ACCACTGGT     TTTTGTT CTCCTTG TTAT            TCTC TT  AT TA                         ACG    TAC                                                 
AT     G   G         AAGAC       -       C    CTTTTCTTTGCA    C  AT  -  -------------------------   TCCT   TTTTCCTTATCAACAAGGTAGGGTATAAATTGTTCCTTAATTAAACGAG

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End