SE0430289

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_2659
  • Brassica rapa
  • SE0430289
  • hAT
  • Hat81
  • A05:10458342-10459049
  • ACTGTAAC
  • TAAGG

Secondary structure and sequence

TSD    TIR
5'



3' 
ACTGTAAC     C     ATTTTATCCGTTAAATTTGATTTGATTTGTTATTCGTTTCGATTCAATCCAAAAATTTTGGATATCCGTAAACTTTCGAAGCAAACCAAATATCAAAAATTAATATCCGTTAAAATCAAAACAAATCACAAATATTAAATTTTTGGAAAGCGGATATCCGCTCTGATCCGGCAATATATAAATACATGTATATCTTGATTATATTAAAAGTTTTAAATGTATAAGTTTATATAATTATTATTCTAACATATGATTTGACAAATTCTATTCACATTATTACTTATATAAAAGTAGTACATAAAAAGAAAGAGAAAATGTTTATGAAAATTATAACT
        TAAGG TTAAC                                                                                                                                                                                                                                                                                                                                               
        ||||| |||||                                                                                                                                                                                                                                                                                                                                               T
        ATTCC GACCT                                                                                                                                                                                                                                                                                                                                               
 CAATGTC     C     GTGTCTAGCCTATAGGTCTAAAAACTTTCATAAACACTAAACTAAGCATACAATGCCTATAAATTAAAAAGCTAAACGAAATGAAACCTTTTTATGCCTATAGGTCTTTTTGCCTATAGGCTTTTTATTTATCTATAAACGCCTATAAATACTTATGAATGATTATAGAGTAGTAAAACTAATTATATTTATTAAAATTTTTAAGCTATGTCAAAAAAAAATTTTATATAAAAAATGTACTATATATTTTATTTTTAATCTTCTTCATAACTTTGATATATAAAACATTTAAAATTTGAATCAATTGTTAATATTATCGTGTTTTGAATTCTTTT
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

Copyright ©.   Contact us: contact@pmite.com   京ICP备2022028499号-3