Plant MITE

SE0430290

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_2660
Brassica rapa
SE0430290
hAT
Hat15
A06:4359863-4360126
ATAACATG
CATGCAGGGCCGGGCCTGAG

Secondary structure and sequence

TSD TIR

5'

3'

ATAA    ----                AAATTTA    C   AGCAAACAAATTTTTTTTGACCCATTATCTTCAAAAATCAGAAAAAGTGGCTAAAAAAAAGGTCTAGTTAATCGAACTCTGCACCTCTCATGCG
    CATG    CAGGGCCGGGCCTGAG       GGCC AGA                                                                                              
    ||||    ||||||||||||||||       |||| |||                                                                                              C
    GTAC    GTCCCGGCCCGGACTC       CGTG TAT                                                                                              
        AATA                --ATTTC    -   TTCGTACACGAACCCCGGCATGTTCTATATATATTAATTTCTCGGTTGTTAATACATTTGCAATGTGATCAAGATGACCATTCTCGTGGCCCTA

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE0430290

ATAACATGCAGGGCCGGGCCTGAGAAATTTAGGCCCAGAAGCAAACAAATTTTTTTTGACCCATTATCTTCAAAAATCAGAAAAAGTGGCTAAAAAAAAGGTCTAGTTAATCGAACTCTGCACCTCTCATGCGCATCCCGGTGCTCTTACCAGTAGAACTAGTGTAACGTTTACATAATTGTTGGCTCTTTAATTATATATATCTTGTACGGCCCCAAGCACATGCTTTATGTGCCTTTACTCAGGCCCGGCCCTGATAACATG

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