SE0450291

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_2661
  • Brassica rapa
  • SE0450291
  • PIF/harbinger
  • To2
  • A09:18164887-18165140
  • TAA
  • ATACCATCTCCAATGGTTTACTCTATTTTTTACTCTAAAATAGAGT

Secondary structure and sequence

TSD    TIR
5'



3' 
TA   C          GG                              ---    ------  ATAACAGAGTTTGAGTTTGCTCTAATGGTACTCTATTTTAGAATATAAAATAGAGTGATGAACAAAAAA
  ATA CATCTCCAAT  TTTACTCTATTTTTTACTCTAAAATAGAGT   AACT      CT                                                                     
  ||| ||||||||||  ||||||||||||||||||||||||||||||   ||||      ||                                                                     A
  TAT GTAGAGGTTG  GGGTGAGATAAAAGGTGAGATTTTATCTCA   CTCA      AC                                                                     
AA   C          --                              AAT    TTTTTT  GAGGTTATCATGAAATAAAGAGTGAGATATTATTTCATTTTTTATCCAAATGAGGTTTATATCTCATTA
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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