SE0450292

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_2662
  • Brassica rapa
  • SE0450292
  • PIF/harbinger
  • To2
  • A06:21232388-21232647
  • TAA
  • AGACCATCTCCAATGGCTTACTCTATTTTTTACTCTAAAATAGAGT

Secondary structure and sequence

TSD    TIR
5'



3' 
TA   C          GG                              -------------       TAATAGAGTTTGATTTTGCTCCAATGGTACTCTATTTTAGAGTAGAAAATAGAGTGATGAACAAAGAAA
  AGA CATCTCCAAT  CTTACTCTATTTTTTACTCTAAAATAGAGT             GACTCTA                                                                     
  ||| ||||||||||  ||||||||||||||||||||||||||||||             |||||||                                                                     A
  TCT GTAGAGGTTG  GGGTGAGATAAAAAGTGAGATTTTATCTCA             ACGAGGT                                                                     
AA   C          --                              AATCTTATTTTTT       TACTATGAGATAAATAGTGAGATATTATCTCATTCGGTAACCAAATGAGGTTTATATCTCATTAAACAA
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

Copyright ©.   Contact us: contact@pmite.com   京ICP备2022028499号-3