SE0450294

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_2664
  • Brassica rapa
  • SE0450294
  • PIF/harbinger
  • To6
  • A03:7041183-7041489
  • TTA
  • AGACCATCTCCAA

Secondary structure and sequence

TSD    TIR
5'



3' 
TT   C         CCCACCCTTATTTC          T     C            AA                                                           A                 ATAT        -CA      AA
  AGA CATCTCCAA              TATCTCTATA TTTCC CTAAAATAGAGA  CTCTATTATAGAGGTGAAAATGCTCCAATGTATGCCTCTATAATAGAGTTTCTCTATTT TAGGGGAAAATATAGAG    GTTATTTT   CCTCTA  
  ||| |||||||||              |||||||||| ||||| ||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||    ||||||||   ||||||   
  TCT GTAGAGGTT              GTGGAGATAT AAAGG GATTTTATCTTT  GAGATAATATCTCCACTTTTACGAGGTTACATACGGAGATATTATCTCAAGGAGATAAA ATTTCCTTTTATATCTC    CAATGAAA   GGAGAT  
AT   C         ----------ACAT          T     A            -A                                                           -                 CTTT        AAC      AT
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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